Package: treesliceR 1.1.0

treesliceR: To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time

Provide a range of functions with multiple criteria for cutting phylogenetic trees at any evolutionary depth. It enables users to cut trees in any orientation, such as rootwardly (from root to tips) and tipwardly (from tips to its root), or allows users to define a specific time interval of interest. It can also be used to create multiple tree pieces of equal temporal width. Moreover, it allows the assessment of novel temporal rates for various phylogenetic indexes, which can be quickly displayed graphically.

Authors:Matheus Lima Araujo [aut, cre, cph], Luiz Gabriel Souza e Souza Ferreira [aut], Gabriel Nakamura [aut], Marco Tulio Pacheco Coelho [aut], Thiago Fernando Rangel [aut]

treesliceR_1.1.0.tar.gz
treesliceR_1.1.0.zip(r-4.7)treesliceR_1.1.0.zip(r-4.6)treesliceR_1.1.0.zip(r-4.5)
treesliceR_1.1.0.tgz(r-4.6-any)treesliceR_1.1.0.tgz(r-4.5-any)
treesliceR_1.1.0.tar.gz(r-4.7-any)treesliceR_1.1.0.tar.gz(r-4.6-any)
treesliceR_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
treesliceR/json (API)
NEWS

# Install 'treesliceR' in R:
install.packages('treesliceR', repos = c('https://araujomat.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/araujomat/treeslicer/issues

Pkgdown/docs site:https://araujomat.github.io

Datasets:
  • AU_adj - Adjacency matrix for focal and adjacent assemblages
  • AU_grid - Australia grid map
  • pass_mat - Presence-absence matrix of Australian passeriformes
  • pass_trees - Phylogenetic tree of passerines from Australia

On CRAN:

Conda:

4.65 score 1 stars 8 scripts 215 downloads 16 exports 37 dependencies

Last updated from:6ed726bdfd. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK226
source / vignettesOK242
linux-release-x86_64OK266
macos-release-arm64OK193
macos-oldrel-arm64OK205
windows-develOK191
windows-releaseOK187
windows-oldrelOK177
wasm-releaseOK153

Exports:%do%%dopar%CpBCpB_RWCpDCpECpR_graphCpR_sensitivityCpR_sensitivity_plotnodes_configphylo_piecesprune_tipsr_phylosqueeze_intsqueeze_rootsqueeze_tips

Dependencies:apeclassclassIntclicodetoolscpp11DBIdigestdoParallele1071farverforeachggplot2gluegtableisobanditeratorsKernSmoothlabelinglatticelifecycleMASSnlmeproxyR6RColorBrewerRcpprlangs2S7scalessfunitsvctrsviridisLitewithrwk

Introduction to treesliceR

Rendered fromIntro-treesliceR.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2024-06-25
Started: 2023-12-05

Passerines Distribution

Rendered fromPasseriformes-distribution.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2024-06-25
Started: 2023-11-14

Passerines Diversification

Rendered fromPasseriformes-diversification.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2024-08-23
Started: 2023-11-09