Package: treesliceR 1.0.1

treesliceR: To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time

Provide a range of functions with multiple criteria for cutting phylogenetic trees at any evolutionary depth. It enables users to cut trees in any orientation, such as rootwardly (from root to tips) and tipwardly (from tips to its root), or allows users to define a specific time interval of interest. It can also be used to create multiple tree pieces of equal temporal width. Moreover, it allows the assessment of novel temporal rates for various phylogenetic indexes, which can be quickly displayed graphically.

Authors:Matheus Lima Araujo [aut, cre, cph], Luiz Gabriel Souza e Souza Ferreira [aut], Gabriel Nakamura [aut], Marco Tulio Pacheco Coelho [aut], Thiago Fernando Rangel [aut]

treesliceR_1.0.1.tar.gz
treesliceR_1.0.1.zip(r-4.5)treesliceR_1.0.1.zip(r-4.4)treesliceR_1.0.1.zip(r-4.3)
treesliceR_1.0.1.tgz(r-4.4-any)treesliceR_1.0.1.tgz(r-4.3-any)
treesliceR_1.0.1.tar.gz(r-4.5-noble)treesliceR_1.0.1.tar.gz(r-4.4-noble)
treesliceR_1.0.1.tgz(r-4.4-emscripten)treesliceR_1.0.1.tgz(r-4.3-emscripten)
treesliceR.pdf |treesliceR.html✨
treesliceR/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/araujomat/treeslicer/issues

On CRAN:

17 exports 1.46 score 45 dependencies 7 scripts 166 downloads

Last updated 26 days agofrom:cb5ed7d84f. Checks:OK: 7. Indexed: yes.

Exports:%do%%dopar%CpBCpB_RWCpDCpECpR_graphCpR_sensitivityCpR_sensitivity_plotDRnodes_configphylo_piecesprune_tipsr_phylosqueeze_intsqueeze_rootsqueeze_tips

Dependencies:apeclassclassIntclicodetoolscolorspaceDBIdigestdoParallele1071fansifarverforeachggplot2gluegtableisobanditeratorsKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigproxyR6RColorBrewerRcpprlangs2scalessftibbleunitsutf8vctrsviridisLitewithrwk